PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0037s0127.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 383aa    MW: 41171.9 Da    PI: 7.749
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0037s0127.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.91.9e-095377226
                          -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                          +++ C +++ t  C++G +C+F H+
  Sphfalx0037s0127.2.p 53 GEKMCAYYMTTRNCSFGTSCRFDHP 77
                          6789********************9 PP

2zf-CCCH37.73.5e-12108133227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           ++  C ++++tG+CkyG +C+F H++
  Sphfalx0037s0127.2.p 108 GETVCAYYMKTGECKYGIKCRFDHPK 133
                           6789********************96 PP

3zf-CCCH34.82.8e-11170192527
                           --SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                            C ++ +tG CkyG++C+F+H++
  Sphfalx0037s0127.2.p 170 DCVYYVKTGSCKYGASCRFNHPE 192
                           69*******************96 PP

4zf-CCCH38.71.7e-12245271127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++ C+ff++tG+C++G++C+F+H+p
  Sphfalx0037s0127.2.p 245 PGEADCSFFLKTGECSFGPTCRFNHPP 271
                           57899********************97 PP

5zf-CCCH35.51.7e-11304326426
                           ---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                            +C ++++tG Ck+G+ CkF H+
  Sphfalx0037s0127.2.p 304 TPCAYYMKTGACKFGPVCKFDHP 326
                           69********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.195178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0285179IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-55277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-45576IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-65777IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6106133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6106135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.605106134IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9108133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-6111133IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6165192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.493165193IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6169194IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-8170192IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-6171193IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-6244271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.159244272IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-10246271IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5248273IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4250270IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-6300327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.07300328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5303327IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8303326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4305325IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MLVFVCYLFA CVLLPCDCGC WLVYIAWGAP DYTKRVRPDS GGVVVGPFPQ RPGEKMCAYY  60
MTTRNCSFGT SCRFDHPTWV PVGGIANWKE VTASVTPTDP ATLPQRPGET VCAYYMKTGE  120
CKYGIKCRFD HPKERTESGS HNDQTQQAVT PVKAAAFNSK GLPIRPSEID CVYYVKTGSC  180
KYGASCRFNH PEANLAGSRA GVPLFPMGAS QSQPPYTPAP IHYQTGQECA YPSGISVVGS  240
YPQRPGEADC SFFLKTGECS FGPTCRFNHP PNRVPSVVSR PSSIAAAASV KLTLAGLPRR  300
ESETPCAYYM KTGACKFGPV CKFDHPTPGE VAAKALEAAR VEVPVMLDTN LSETSTIGLN  360
EPSVASSGND VVVETFSSAQ EV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001766711.11e-111predicted protein, partial
TrEMBLA9SK181e-111A9SK18_PHYPA; Predicted protein (Fragment)
STRINGBra034744.1-P9e-86(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.19e-81floral homeotic protein (HUA1)